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1

So Many Variables: Joint Modeling in Community Ecology

Warton, David I., Blanchet, F. Guillaume, O’Hara, Robert B., Ovaskainen, Otso, Taskinen, Sara, Walker, Steven C., Hui, Francis K.C.

Journal:

Trends in Ecology & Evolution

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

2

Give me a sample of air and I will tell which species are found from your region - molecular identification of fungi from airborne spore samples

Abrego, Nerea, Norros, Veera, Halme, Panu, Somervuo, Panu, Ali-Kovero, Heini, Ovaskainen, Otso

Journal:

Molecular Ecology Resources

Year:

2018

Language:

english

File:

PDF, 643 KB

english, 2018

3

Novel Insights into the Map Stage of True Navigation in Nonmigratory Wild Birds (Stone Curlews, Burhinus oedicnemus )

Orchan, Yotam, Ovaskainen, Otso, Bouten, Willem, Nathan, Ran

Journal:

American Naturalist

Year:

2016

Language:

english

File:

PDF, 3.52 MB

english, 2016

4

Extending Joint Models in Community Ecology: A Response to Beissinger et al.

Warton, David I., Blanchet, F. Guillaume, O’Hara, Robert, Ovaskainen, Otso, Taskinen, Sara, Walker, Steven C., Hui, Francis K.C.

Journal:

Trends in Ecology & Evolution

Year:

2016

Language:

english

File:

PDF, 241 KB

english, 2016

5

Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

Lammel, Daniel R., Barth, Gabriel, Ovaskainen, Otso, Cruz, Leonardo M., Zanatta, Josileia A., Ryo, Masahiro, de Souza, Emanuel M., Pedrosa, Fábio O.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

6

Higher host plant specialization of rootâassociated endophytes than mycorrhizal fungi along an arctic elevational gradient

Abrego, Nerea, Huotari, Tea, Tack, Ayco J. M., Lindahl, BjÃ¶rn D., Tikhonov, Gleb, Somervuo, Panu, Martin Schmidt, Niels, Ovaskainen, Otso, Roslin, Tomas

Journal:

Ecology and Evolution

Year:

2020

File:

PDF, 1.25 MB

2020

7

Ecological speciation in postglacial European whitefish: rapid adaptive radiations into the littoral, pelagic, and profundal lake habitats

Praebel, Kim, Knudsen, Rune, Siwertsson, Anna, Karhunen, Markku, Kahilainen, Kimmo K., Ovaskainen, Otso, Østbye, Kjartan, Peruzzi, Stefano, Fevolden, Svein-Erik, Amundsen, Per-Arne

Journal:

Ecology and Evolution

Year:

2013

Language:

english

File:

PDF, 1.62 MB

english, 2013

8

Wood-inhabiting fungi with tight associations with other species have declined as a response to forest management

Abrego, Nerea, Dunson, David, Halme, Panu, Salcedo, Isabel, Ovaskainen, Otso

Journal:

Year:

2016

Language:

english

File:

PDF, 472 KB

english, 2016

9

Eco‐Evolutionary Metapopulation Dynamics and the Spatial Scale of Adaptation.

Hanski, Ilkka, Mononen, Tommi, Ovaskainen, Otso

Journal:

American Naturalist

Year:

2011

Language:

english

File:

PDF, 2.70 MB

english, 2011

10

Extinction Debt at Extinction Threshold

Ilkka Hanski, Otso Ovaskainen

Journal:

Conservation Biology

Year:

2002

File:

PDF, 499 KB

2002

11

Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?

Otso Ovaskainen, Jussi Nokso-Koivisto, Jenni Hottola, Tiina Rajala, Taina Pennanen, Heini Ali-Kovero, Otto Miettinen, Petri Oinonen, Petri Auvinen, Lars Paulin, Karl-Henrik Larsson, Raisa Mäkipää

Journal:

Year:

2010

Language:

english

File:

PDF, 454 KB

english, 2010

12

Biased Movement at a Boundary and Conditional Occupancy Times for Diffusion Processes

Otso Ovaskainen and Stephen J. Cornell

Journal:

Journal of Applied Probability

Year:

2003

Language:

english

File:

PDF, 1.87 MB

english, 2003

13

Fruit body based inventories in wood-inhabiting fungi: Should we replicate in space or time?

Abrego, Nerea, Halme, Panu, Purhonen, Jenna, Ovaskainen, Otso

Journal:

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

14

Stochastic models of population extinction

Otso Ovaskainen, Baruch Meerson

Journal:

Trends in Ecology & Evolution

Year:

2010

Language:

english

File:

PDF, 461 KB

english, 2010

15

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs

Mäkipää, Raisa, Rajala, Tiina, Schigel, Dmitry, Rinne, Katja T, Pennanen, Taina, Abrego, Nerea, Ovaskainen, Otso

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 800 KB

english, 2017

16

Soil fertility in boreal forest relates to root-driven nitrogen retention and carbon sequestration in the mor layer

Kyaschenko, Julia, Ovaskainen, Otso, Ekblad, Alf, Hagenbo, Andreas, Karltun, Erik, Clemmensen, Karina E., Lindahl, Björn D.

Journal:

New Phytologist

Year:

2018

Language:

english

File:

PDF, 997 KB

english, 2018

17

Experimentally induced community assembly of polypores reveals the importance of both environmental filtering and assembly history

Norberg, Anna, Halme, Panu, Kotiaho, Janne S., Toivanen, Tero, Ovaskainen, Otso

Journal:

Year:

2019

Language:

english

File:

PDF, 2.00 MB

english, 2019

18

Interactions between dispersal, competition, and landscape heterogeneity

Ace North, Otso Ovaskainen

Journal:

Year:

2007

Language:

english

File:

PDF, 362 KB

english, 2007

19

The spatial scale of local adaptation in a stochastic environment

Hadfield, Jarrod D., Ovaskainen, Otso

Journal:

Ecology Letters

Year:

2016

Language:

english

File:

PDF, 589 KB

english, 2016

20

Frontiers in Metapopulation Biology: The Legacy of Ilkka Hanski

Ovaskainen, Otso, Saastamoinen, Marjo

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2018

Language:

english

File:

PDF, 352 KB

english, 2018

21

A statistical framework for inferring the influence of conspecifics on movement behaviour

Delgado, María del Mar, Penteriani, Vincenzo, Morales, Juan Manuel, Gurarie, Eliezer, Ovaskainen, Otso, Giuggioli, Luca

Journal:

Methods in Ecology and Evolution

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

22

The past and the present in decision-making: the use of conspecific and heterospecific cues in nest site selection

Kivelä, Sami M., Seppänen, Janne-Tuomas, Ovaskainen, Otso, Doligez, Blandine, Gustafsson, Lars, Mönkkönen, Mikko, Forsman, Jukka T.

Journal:

Year:

2014

Language:

english

File:

PDF, 661 KB

english, 2014

23

Interactions between dispersal, competition, and landscape heterogeneity

North, Ace, Ovaskainen, Otso

Journal:

Year:

2007

Language:

english

File:

PDF, 368 KB

english, 2007

24

Quantitative Ecology and Evolutionary Biology (Integrating models with data) || Genetics and evolutionary ecology

Ovaskainen, Otso, de Knegt, Henrik Johan, Delgado, Maria del Mar

Year:

2016

Language:

english

File:

PDF, 3.21 MB

english, 2016

25

Secondary forest regeneration benefits old-growth specialist bats in a fragmented tropical landscape

Rocha, Ricardo, Ovaskainen, Otso, López-Baucells, Adrià, Farneda, Fábio Z., Sampaio, Erica M., Bobrowiec, Paulo E. D., Cabeza, Mar, Palmeirim, Jorge M., Meyer, Christoph F. J.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.65 MB

english, 2018

26

Handbook for the measurement of macrofungal functional traits; a start with basidiomycete wood fungi

Dawson, Samantha Katherine, Boddy, Lynne, Halbwachs, Hans, Bässler, Claus, Andrew, Carrie, Crowther, Thomas Ward, Heilmann-Clausen, Jacob, Nordén, Jenni, Ovaskainen, Otso, Jönsson, Mari

Journal:

Functional Ecology

Year:

2018

Language:

english

File:

PDF, 798 KB

english, 2018

27

Spatio‐temporal scaling of biodiversity in acoustic tropical bird communities

Camargo, Ulisses, Roslin, Tomas, Ovaskainen, Otso

Journal:

Year:

2019

Language:

english

File:

PDF, 850 KB

english, 2019

28

Joint species distribution modelling with the R‐package Hmsc

Tikhonov, Gleb, Opedal, Øystein H., Abrego, Nerea, Lehikoinen, Aleksi, de Jonge, Melinda M.J., Oksanen, Jari, Ovaskainen, Otso

Journal:

Methods in Ecology and Evolution

Year:

2019

File:

PDF, 1.93 MB

2019

29

Author Correction: Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology

Ovaskainen, Otso, Meyke, Evgeniy, Lo, Coong, Tikhonov, Gleb, Delgado, Maria del Mar, Roslin, Tomas, Gurarie, Eliezer, Abadonova, Marina, Abduraimov, Ozodbek, Adrianova, Olga, Akimova, Tatiana, Akkiev,

Journal:

Scientific Data

Year:

2020

File:

PDF, 684 KB

2020

30

Evolutionary Dynamics of Wild Populations || A Bayesian Framework for Comparative Quantitative Genetics

Otso Ovaskainen, José Manuel Cano and Juha Merilä

Journal:

Proceedings Biological Sciences

Year:

2008

Language:

english

File:

PDF, 1.95 MB

english, 2008

31

Bayesian state-space modeling of metapopulation dynamics in the Glanville fritillary butterfly

Philip J. Harrison, Ilkka Hanski and Otso Ovaskainen

Journal:

Ecological Monographs

Year:

2011

Language:

english

File:

PDF, 3.09 MB

english, 2011

32

A General Approach to Model Movement in (Highly) Fragmented Patch Networks

Morales, Juan Manuel, di Virgilio, Agustina, del Mar Delgado, María, Ovaskainen, Otso

Journal:

Journal of Agricultural, Biological, and Environmental Statistics

Year:

2017

Language:

english

File:

PDF, 3.80 MB

english, 2017

33

Maternal effects shape the seed mycobiome in Quercus petraea

Fort, Tania, Pauvert, Charlie, Zanne, Amy E., Ovaskainen, Otso, Caignard, Thomas, Barret, Matthieu, Compant, StÃ©phane, Hampe, Arndt, Delzon, Sylvain, Vacher, Corinne

Journal:

New Phytologist

Year:

2020

File:

PDF, 19.31 MB

2020

34

Modelling dispersal with diffusion and habitat selection: Analytical results for highly fragmented landscapes

Chaozhi Zheng, Juho Pennanen, Otso Ovaskainen

Journal:

Ecological Modelling

Year:

2009

Language:

english

File:

PDF, 839 KB

english, 2009

35

A Unified Measure of the Number, Volume and Diversity of Dead Trees and the Response of Fungal Communities

Jenni Hottola, Otso Ovaskainen and Ilkka Hanski

Journal:

Journal of Ecology

Year:

2009

Language:

english

File:

PDF, 1.54 MB

english, 2009

36

Measuring and predicting the influence of traits on the assembly processes of wood-inhabiting fungi

Abrego, Nerea, Norberg, Anna, Ovaskainen, Otso, Aerts, Rien

Journal:

Journal of Ecology

Year:

2017

Language:

english

File:

PDF, 839 KB

english, 2017

37

Discovery of long-distance gamete dispersal in a lichen-forming ascomycete

Ronnås, Cecilia, Werth, Silke, Ovaskainen, Otso, Várkonyi, Gergely, Scheidegger, Christoph, Snäll, Tord

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 868 KB

english, 2017

38

Biased movement at a boundary and conditional occupancy times for diffusion processes

Ovaskainen, Otso, Cornell, Stephen J.

Journal:

Journal of Applied Probability

Year:

2003

File:

PDF, 380 KB

2003

39

SPIKEPIPE : A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Ji, Yinqiu, Huotari, Tea, Roslin, Tomas, Schmidt, Niels Martin, Wang, Jiaxin, Yu, Douglas W., Ovaskainen, Otso

Journal:

Molecular Ecology Resources

Year:

2019

Language:

english

File:

PDF, 1.14 MB

english, 2019

40

A unified framework for analysis of individual-based models in ecology and beyond

Cornell, Stephen J., Suprunenko, Yevhen F., Finkelshtein, Dmitri, Somervuo, Panu, Ovaskainen, Otso

Journal:

Nature Communications

Year:

2019

File:

PDF, 2.72 MB

2019

41

Bioregions in Marine Environments: Combining Biological and Environmental Data for Management and Scientific Understanding

Woolley, Skipton N C, Foster, Scott D, Bax, Nicholas J, Currie, Jock C, Dunn, Daniel C, Hansen, Cecilie, Hill, Nicole, O’Hara, Timothy D, Ovaskainen, Otso, Sayre, Roger, Vanhatalo, Jarno P, Dunstan, P

Journal:

Year:

2019

File:

PDF, 3.35 MB

2019

42

Joint Species Distribution Modelling (With Applications in R) || Historical Development of Community Ecology

Ovaskainen, Otso, Abrego, Nerea

Year:

2020

File:

PDF, 222 KB

2020

43

Convergence of fungal traits over time in natural and forestry-fragmented patches

Dawson, Samantha K., Berglund, HÃ¥kan, Ovaskainen, Otso, SnÃ¤ll, Tord, Jonsson, Bengt G., JÃ¶nsson, Mari

Journal:

Biological Conservation

Year:

2020

File:

PDF, 1.64 MB

2020

44

Making more out of sparse data: hierarchical modeling of species communities

Otso Ovaskainen and Janne Soininen

Journal:

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

45

Bayesian state-space modeling of metapopulation dynamics in the Glanville fritillary butterfly

Harrison, Philip J., Hanski, Ilkka, Ovaskainen, Otso

Journal:

Ecological Monographs

Year:

2011

Language:

english

File:

PDF, 1.79 MB

english, 2011

46

Joint species movement modeling: how do traits influence movements?

Ovaskainen, Otso, Ramos, Danielle Leal, Slade, Eleanor M., Merckx, Thomas, Tikhonov, Gleb, Pennanen, Juho, Pizo, Marco Aurélio, Ribeiro, Milton Cezar, Morales, Juan Manuel

Journal:

Year:

2019

Language:

english

File:

PDF, 618 KB

english, 2019

47

Joint Species Distribution Modelling (With Applications in R) || Typical Data Collected by Community Ecologists

Ovaskainen, Otso, Abrego, Nerea

Year:

2020

File:

PDF, 153 KB

2020

48

Specialist species of wood-inhabiting fungi struggle while generalists thrive in fragmented boreal forests

Nordén, Jenni, Penttilä, Reijo, Siitonen, Juha, Tomppo, Erkki, Ovaskainen, Otso, Thrall, Peter

Journal:

Journal of Ecology

Year:

2013

Language:

english

File:

PDF, 125 KB

english, 2013

49

Animal Sound Identifier (ASI): software for automated identification of vocal animals

Ovaskainen, Otso, Moliterno de Camargo, Ulisses, Somervuo, Panu, Lawler, Joshua

Journal:

Ecology Letters

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

50

Joint Species Distribution Modelling (With Applications in R) || Typical Statistical Methods Applied by Community Ecologists

Ovaskainen, Otso, Abrego, Nerea

Year:

2020

File:

PDF, 73 KB

2020

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